PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G092800.1
Common NameB456_009G092800, LOC105769626
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 388aa    MW: 42651.8 Da    PI: 8.7168
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G092800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-05149172123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ Cg+ F  +++L++H+ t H
  Gorai.009G092800.1 149 FPCTACGEIFQKSHLLEQHQATkH 172
                         89******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.847149177IPR007087Zinc finger, C2H2
PROSITE patternPS000280151172IPR007087Zinc finger, C2H2
SuperFamilySSF563995.18E-13174386No hitNo description
Gene3DG3DSA:3.90.228.107.1E-6321386IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MAKANIGSFF NKFLSLFILL LHLGCFVFTA AKDNHKATKK RKSSPLSPNS HKHRKALSST  60
WTFLKRIFSS KANCINTIQA AHPPTSATTP ALTSARNSQH SLVSMSMINP PETHLSDSPP  120
PRSQIQSGSC PESGISSDYP FFPLRNDIFP CTACGEIFQK SHLLEQHQAT KHAVSELVDG  180
DSGNNIVRII FKTGWTDKVK SPEIHRILKI HNSPKILTKF EEYREVVKAK AARNGAMGRR  240
DERCIADGNE LLRFNCSTFT CDLGLNGSSS ICNQQYCSIC GIIKSGFSPK MDGISTLSTS  300
WRAHMAIPED VEEEFKFMNV KRAMLVCRVV AGRVGSEGEE IDKEDGGFDS VIGRGGGSGA  360
YTKLDEEELL VFNPRAVLPC FVIVYTV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445838.10.0PREDICTED: uncharacterized protein LOC105769626
RefseqXP_012445839.10.0PREDICTED: uncharacterized protein LOC105769626
RefseqXP_012445840.10.0PREDICTED: uncharacterized protein LOC105769626
TrEMBLA0A0D2TGH10.0A0A0D2TGH1_G
STRINGPOPTR_0001s25700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]